TY  - BOOK
AU  - Contreras-Moreira,Bruno
AU  - Naamati,Guy
AU  - Rosello,Marc
AU  - Allen,James E.
AU  - Hunt,Sarah E.
AU  - Muffato,Matthieu
AU  - Gall,Astrid
AU  - Flicek,Paul
TI  - Scripting Analyses of Genomes in Ensembl Plants
PY  - 2022///-01-01
KW  - Text
KW  - local
N1  - /pmc/articles/PMC7614177; /pubmed/35037199
N2  - Ensembl Plants (http://plants.ensembl.org) offers genome-scale information for plants, with four releases per year. As of release 47 (April 2020) it features 79 species and includes genome sequence, gene models, and functional annotation. Comparative analyses help reconstruct the evolutionary history of gene families, genomes, and components of polyploid genomes. Some species have gene expression baseline reports or variation across genotypes. While the data can be accessed through the Ensembl genome browser, here we review specifically how our plant genomes can be interrogated programmatically and the data downloaded in bulk. These access routes are generally consistent across Ensembl for other non-plant species, including plant pathogens, pests, and pollinators
UR  - http://dx.doi.org/10.1007/978-1-0716-2067-0_2
ER  -