000 01759 am a22002893u 4500
042 _adc
100 1 0 _aContreras-Moreira, Bruno
_eauthor
700 1 0 _aNaamati, Guy
_eauthor
700 1 0 _aRosello, Marc
_eauthor
_92996
700 1 0 _aAllen, James E.
_eauthor
700 1 0 _aHunt, Sarah E.
_eauthor
_92998
700 1 0 _aMuffato, Matthieu
_eauthor
_92999
700 1 0 _aGall, Astrid
_eauthor
_93000
700 1 0 _aFlicek, Paul
_eauthor
245 0 0 _aScripting Analyses of Genomes in Ensembl Plants
260 _c2022-01-01.
500 _a/pmc/articles/PMC7614177/
500 _a/pubmed/35037199
520 _aEnsembl Plants (http://plants.ensembl.org) offers genome-scale information for plants, with four releases per year. As of release 47 (April 2020) it features 79 species and includes genome sequence, gene models, and functional annotation. Comparative analyses help reconstruct the evolutionary history of gene families, genomes, and components of polyploid genomes. Some species have gene expression baseline reports or variation across genotypes. While the data can be accessed through the Ensembl genome browser, here we review specifically how our plant genomes can be interrogated programmatically and the data downloaded in bulk. These access routes are generally consistent across Ensembl for other non-plant species, including plant pathogens, pests, and pollinators.
540 _a
540 _ahttps://creativecommons.org/licenses/by/4.0/This work is licensed under a CC BY 4.0 (https://creativecommons.org/licenses/by/4.0/) International license.
546 _aen
690 _aArticle
655 7 _aText
_2local
786 0 _nMethods Mol Biol
856 4 1 _uhttp://dx.doi.org/10.1007/978-1-0716-2067-0_2
_zConnect to this object online.
999 _c2396
_d2396